YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fmo-2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNKRVAVIG AGASGLPSIR HGLLYGFDVT CFEASDDIGG LWRYKSHETN ESSVMKTTVI  60
   61 NTSKEMTAYS DFTPQENLAN FMHNNEMLNY FKSYAEHHGL MKHIKLRHRV LNIERSKNYD 120
  121 NDGTWKVIYQ TPEEKTLEEI FDGVLVCSGH HAIPHWPKPF PGQNEFKGRI VHSHDYKDHK 180
  181 GYEDKVVVVV GIGNSGIDVA VEQSRIAKQV YLVTRRGTWL IPKLETRGLP FDIIMNTRFF 240
  241 SLYKLFPQAM LNSLVEYRIN QRIDHDLYGL KPAHRVFSAH PSLNDELPNR IANGTVRIKP 300
  301 NIKKFDGYAI HFEDGTIVPH VDEVVMSTGF SFEFNLIEHG KLVPVSENEV DLFKYMFPVA 360
  361 TSDHNSLCII GLIQPFGSIM PVSEQQARVF FANMVSGNNL IPKKSQMSED VLNKKEAMAQ 420
  421 QFVKSRRHTI QVDYIPYMDE LAELIGCQVP LLRTLFTDPV LGLRLFFGPN AGYCYRLAGP 480
  481 HTWNGARNAI LTIDQRVRMA TTTKPEPTNY TVPLVISSII LLLVIYFVM

Type	Start	End	Confidence
Signal Peptide	1	22	0.62
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	509	0.93
Transmembrane Helix	510	528	0.76
Cytoplasmic	529	529	0.65