YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06133
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTRKRKEN GIEKKKEVVK SNVSPEAQKK VDEFYNNQKE LLQKFDEDQK TIGKPLQKTA  60
   61 EEDERYEDRV LAQATFALNI GSLIGNLAAS IISGSLSIMS TFVDSSMDIA CSFVMNICLS 120
  121 EINKTDAQKY PRGRDRLELI GVILCSVIMA FANVSMIMQS INSIVNDTVD PKMTNSTIAI 180
  181 IVIQTVLKGI IMWFCYKRGS TSSLVIAMDL RNDLMTRSLA LVCGYLGDYV WKFADPIGAI 240
  241 CVCTWIAYSW CRHAIDNIPQ LVGITAERDQ LARILNITLK HDKRIKYIDH SMIYYTGLNA 300
  301 QVELHIVLDE KLPLRITHDI SHDLEKNIQK LDFVERCFVH VDYNCDGD

Type	Start	End	Confidence
Cytoplasmic	1	74	0.90
Transmembrane Helix	75	94	0.76
Non-Cytoplasmic	95	100	0.46
Transmembrane Helix	101	119	0.66
Cytoplasmic	120	138	0.81
Transmembrane Helix	139	158	0.95
Non-Cytoplasmic	159	175	0.81
Transmembrane Helix	176	196	0.83
Cytoplasmic	197	348	0.80