YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nas-19
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLKIFRLLL EIKSSILKIC VYFSSKNYGI LSISFAFLLI YFDVLYEKFP TDLHIPLDFS  60
   61 YKNKVENGIN EHIAGGNIIQ HLEMVRLIHL IGAIILLFSY AYCGLSRLNE HDIEESYSHK 120
  121 RVKRQFERLG TKWSYGVVNY YYADKNNEIK EMVESAIAYI ANHTCIRFNE DQNAVQRVQI 180
  181 RMQQNWLCQS TVGAPGMSMS KPIGELSMLV QSCDTIGSIV HEFSHSLGRF HEHTRPDRDN 240
  241 FMKVTTTVHE ARPRPSGMTT MYGPFEHGSV MMYHADTYGP GTMDPLDMDY KQTMGNRRVT 300
  301 FYDMYKINQY YGCWCSKQLE CKNGGYTSPS DCSRCNCPKG FFGNLCDERQ QDSYELMAVN 360
  361 NLWQSITIPF AYKPEPGSDG FYSTFVYITG KANSTIEITL EGLQDVICTA GCTVNGVEIK 420
  421 FKEDSKITSP VVCCTDKPPY KNVFKSSHNP TIIELYSRTT LPSAVTFKYR FTNDKVVLG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	42	0.71
Non-Cytoplasmic	43	84	0.77
Transmembrane Helix	85	105	0.77
Cytoplasmic	106	479	0.58