YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05989
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFTECKTTF IHLPDKSFLY DVFVSVYNFY HPIHAYLSIF LCVLGTIANF CNIVVLTRRT  60
   61 MRTPVNMILT AMASCDTVVL FSNLIYTTHY SFVAFKFCHP KHWSYSWALF LIAHAHLSLV 120
  121 AHSSSVWLSV MLALVRYVTL RSRGNMGGMQ VTLRHSYYAV AVTVSLVAVL NAPNFLNYKI 180
  181 NEQPLNETCT DLDPMFWNSP AYLPGIADIA KANSCLVFRL SYWISGMVFK VLPCALLSLF 240
  241 VWLLLRILRE VRENRQRLLK NSQHRPPNQT TTRNGQRLSI SVAGNEKLGR NGSLRGRGER 300
  301 VDRTTHMLLA IVAVMLVTEL PQGIMAVLSG MCSEEFRIYI YNNLGDILDL FSLCGSCCSF 360
  361 IIYCSMSGQF RNEFHRVFVP AKVRCLRMSS PSIRRPSDAY STTKMTFLKP NEKNGNGMNG 420
  421 NGTYSEDTRS ASVKMVGIQV RRNSTEITRM TGCDSITPCS PMPTSFPSSP LPPIRSGEDE 480
  481 STDETSHLLN SSGPNSTASA DGIRGHFQNI

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.96
Transmembrane Helix	33	56	0.92
Cytoplasmic	57	64	0.92
Transmembrane Helix	65	87	0.88
Non-Cytoplasmic	88	111	0.91
Transmembrane Helix	112	135	0.90
Cytoplasmic	136	154	0.85
Transmembrane Helix	155	175	0.90
Non-Cytoplasmic	176	225	0.97
Transmembrane Helix	226	248	0.90
Cytoplasmic	249	304	0.99
Transmembrane Helix	305	326	0.90
Non-Cytoplasmic	327	346	0.87
Transmembrane Helix	347	366	0.90
Cytoplasmic	367	510	0.94