YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05988
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.83
Transmembrane Helix	10	28	0.90
Non-Cytoplasmic	29	47	0.90
Transmembrane Helix	48	69	0.94
Cytoplasmic	70	78	0.85
Transmembrane Helix	79	97	0.93
Non-Cytoplasmic	98	104	0.78
Transmembrane Helix	105	126	0.84
Cytoplasmic	127	145	0.86
Transmembrane Helix	146	167	0.85
Non-Cytoplasmic	168	185	0.81
Transmembrane Helix	186	206	0.95
Cytoplasmic	207	248	0.96
Transmembrane Helix	249	271	0.83
Non-Cytoplasmic	272	280	0.79
Transmembrane Helix	281	302	0.91
Cytoplasmic	303	311	0.87
Transmembrane Helix	312	333	0.89
Non-Cytoplasmic	334	369	0.96
Transmembrane Helix	370	393	0.88
Cytoplasmic	394	412	0.87
Transmembrane Helix	413	431	0.87
Non-Cytoplasmic	432	435	0.80
Transmembrane Helix	436	454	0.93
Cytoplasmic	455	487	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCEHTNWRV VYLMGVFSLI QNTQYSIYLT SMFSYLKKLD ATATESQFGW IMATSSLGHC  60
   61 IGCFVLGWWN SRGRKSSPPM HCGFLLMLAS NLVYLLVDSV PSDWVAHVMM VSRLLGGFGM 120
  121 GNSSPMRTCA SFHSTHSDRS KAMASISGGR SVGTVVGPGL QLMFLPLGET GIMILPGILS 180
  181 LHSNNAPAFL GIVLTMIGFV SLIVLFEEEI AEESDKTAIA DFENQYNTVK EEYPKSDIVA 240
  241 MLICMLTRFV QNFMQISIET LAPAMLMMMY FQTRQEAVAS MATTYLTTGF IATILYVLII 300
  301 FTKLSTIVRD KIFNSLVLLL FVCHLLTTYS WQFYSDSVLD EEFSNETLTG CDDIHFTWCD 360
  361 SLTISPQWAF YIGYILSFGL FMPFINVANA TLYSKLLNPD SQGTQQSLYD ISNTTARIFA 420
  421 PIFITLIYTV YGPRRVWEFL CLLLLFTTFL WIIFDKRLVP IKPIQKQMFD NDGFEQDKLS 480
  481 KIKLVSC