YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	elo-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQHPLVQRL LDVKFDTKRF VAIATHGPKN FPDAEGRKFF ADHFDVTIQA SILYMVVVFG  60
   61 TKWFMRNRQP FQLTIPLNIW NFILAAFSIA GAVKMTPEFF GTIANKGIVA SYCKVFDFTK 120
  121 GENGYWVWLF MASKLFELVD TIFLVLRKRP LMFLHWYHHI LTMIYAWYSH PLTPGFNRYG 180
  181 IYLNFVVHAF MYSYYFLRSM KIRVPGFIAQ AITSLQIVQF IISCAVLAHL GYLMHFTNAN 240
  241 CDFEPSVFKL AVFMDTTYLA LFVNFFLQSY VLRGGKDKYK AVPKKKNN

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.62
Transmembrane Helix	46	65	0.64
Cytoplasmic	66	72	0.85
Transmembrane Helix	73	93	0.88
Non-Cytoplasmic	94	124	0.88
Transmembrane Helix	125	146	0.87
Cytoplasmic	147	152	0.90
Transmembrane Helix	153	171	0.90
Non-Cytoplasmic	172	178	0.81
Transmembrane Helix	179	197	0.95
Cytoplasmic	198	211	0.80
Transmembrane Helix	212	233	0.87
Non-Cytoplasmic	234	250	0.86
Transmembrane Helix	251	272	0.85
Cytoplasmic	273	288	0.94