YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-121
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDVARLGA RLICLVSALT VGFTLITFIH ISSKIQKTEN EIIGNQSAFK AKSQVIWAEL  60
   61 METGRSLRIP RSSYGTDEKK GVLHQCSQCT RLHCPQGPIG EEGSPGNDGQ PGTPGKPGSP 120
  121 GLEGVDVDLE PQEELPCSIC PAGPQGPRGA QGERGLPGNA GRKGKSGKSG HPGQPGGIGA 180
  181 SGAKGPTGTR GTPGMKGPPG DTIIAGEGIK GPPGLQGSQG PKGPPGNSGR SSNIRGPSGK 240
  241 PGQQGGIGGT GKFGKYGEQG GIGAPGEPGL PATYCPSDCG VNTILSQFGS RAQHPESING 300
  301 EDNGAPAANT EEYNSEERIE SPAPPAPQPT TNQQQETVAA AASEQESFEE SSYRSFFGH

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	31	0.87
Non-Cytoplasmic	32	359	0.98