YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05923
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLNLTFILF FITIEANAYC PFKKAYVDDI LMITTDDYLS VGQDETSEVC EIEIQSLNGN  60
   61 LILVSITNFL MFSHRRPRNP NEIILRNSDM QFIVDSKPKG YQLMKTPVWL TIPMNLNFRS 120
  121 ILLFSNPKEC SSYESIRCPE YSLCYNCSKY CFSSSLECDG LDTCGEDEST CAFITPRTPH 180
  181 TSYRYGRDAL SSSQIMLIGF FALNGSFIVF FLILSLCSAG LFYRCPFYAK NSNASRHTFI 240
  241 RYLRQAIPPA LAPPPSVQGD QPKDEGEKTL TVPSTPTGHT RHRHSILSRI NFQPAPALSE 300
  301 IEPEVEDREQ SPQESICEPP AHQPEVFLRR QSLPFGLTAV PVSNDLNSKT DDKRNRFASR 360
  361 AMSFQH

Type	Start	End	Confidence
Signal Peptide	1	18	0.89
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	196	0.95
Transmembrane Helix	197	222	0.83
Cytoplasmic	223	366	0.92