YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05827
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSDSGRGDI RRLKDGEILK YTSGIFSSKW KKMYAVLFSD SRLVWFENRG DRKPKGSVLL  60
   61 KDVIPYICVG LMTDRMPVKR PNVPEGNSVH HLVGIGMNPK ADPCHWILFS SDSDIESWFT 120
  121 EITKTLPKPA NPPPNAPQQG PGAQPPQQQN NGGYVPPTVY PSAPPPVQPG YNPRPASGQS 180
  181 YPSGPQVPPA YGQYPQPGYP QPAGVPTSSH TTVIVRDGGY GGGGYGGYGG GGGGFGSTGL 240
  241 GFGSGILAGS LLGYGLGSMW GGHHSYGGWG GGYGGGGYGM AGGYYSDNDT TVTNNYYNYG 300
  301 DNDNNGGNNH SSSSNAITDA PGNAGDQSQQ QSDNNYGNAN QDSYDQGNDY GNDYGNAGYD 360
  361 SGDFGGGDYG GGGYDSGDFG GGDFGGGDFG GGDFGGGDY

Type	Start	End	Confidence
Cytoplasmic	1	225	0.61
Transmembrane Helix	226	252	0.51
Non-Cytoplasmic	253	265	0.63
Transmembrane Helix	266	285	0.45
Cytoplasmic	286	399	0.58