YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7500120, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSGAIIIG LFFIASIFDV FRAEKEPPAE DSRLEDYLSS ELETTAIPTV VNENSHSQDV  60
   61 VDSGFSKDLP KLTILYWFVF WIFLNINLTI VFSVSCGYKQ AFNQFYEFAK EKYPGLVIEG 120
  121 GNFSPDFWKG CLAQIVGVAK IGLIAIVITG SNPFEYIGFG YPQILQTAHY NRFSYSLLVF 180
  181 MIGNLFESTL SSTGAFEIFL GDKQIWSKIS KERVPTQEEF LNLIDLQLKT IR

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.32
Transmembrane Helix	5	23	0.44
Cytoplasmic	24	73	0.59
Transmembrane Helix	74	96	0.84
Non-Cytoplasmic	97	130	0.60
Transmembrane Helix	131	154	0.67
Cytoplasmic	155	172	0.45
Transmembrane Helix	173	196	0.59
Non-Cytoplasmic	197	232	0.47