YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEDPKQIAQ ETESLRKVAF FGIAVSTIAT LTAIIAVPML YNYMQHVQSS LQSEVEFCQH  60
   61 RSNGLWDEYK RFQGVSGVEG RIKRDAYHRS LGVSGASRKA RRQSYGNDAA VGGFGGSSGG 120
  121 SCCSCGSGAA GPAGSPGQDG APGNDGAPGA PGNPGQDASE DQTAGPDSFC FDCPAGPPGP 180
  181 SGAPGQKGPS GAPGAPGQSG GAALPGPPGP AGPPGPAGQP GSNGNAGAPG APGQVVDVPG 240
  241 TPGPAGPPGS PGPAGAPGQP GQAGSSQPGG PGPQGDAGAP GAPGAPGQAG APGQDGESGS 300
  301 EGACDHCPPP RTAPGY

Type	Start	End	Confidence
Cytoplasmic	1	18	0.96
Transmembrane Helix	19	41	0.94
Non-Cytoplasmic	42	316	0.98