YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	eat-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMLGSMFSM VKPRLDDLGT DRLNYYYSTL IIMGMSLTIT ARQYVGSPLQ CWVPAQFTKA  60
   61 WEQYAEDYCF VYNTYWVKPN DKVPLTVEER VSQQLIYYQW APFIMAIEAA FFYLPVIFWS 120
  121 MLSTKSGINI IKLVETAQKA EGAESEERKK QIDIICRHIS NNLRKRRNEE ETTKMAKIQR 180
  181 IFGMQHGKYI TNVYLVTKLI YMTNSFLQFY STNKFLGQND PYWGMRILDD ILKGTDWEHS 240
  241 GNFPRIAMCD FQVRVLGNLQ RYSIQCVLTL NMFNEKIFLF LYIWFLLVFF VTLFDSIFLC 300
  301 YNMFSSHKLV EFLQQFLDNQ DQDENDEKKP EERKVYRKEQ HSILLSEFCL HKFTPDIIIL 360
  361 LKMINNHTGD IVCTEIVGRM WNEFLERDAK LVLQRFVDND HHMETKSSSL KSEKLFEEQR 420
  421 SFI

Type	Start	End	Confidence
Cytoplasmic	1	22	0.89
Transmembrane Helix	23	42	0.85
Non-Cytoplasmic	43	99	0.92
Transmembrane Helix	100	122	0.87
Cytoplasmic	123	277	0.84
Transmembrane Helix	278	301	0.88
Non-Cytoplasmic	302	423	0.75