YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05610
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKLFISLC VVAVVVAKKG NNTQGGHGDL EVQEAQEDTE DTEDNHHHHS FRMSLMMLDI  60
   61 YNEFQQNKTA FDAEIRTNIT SVIGNLANVN TQLNSIFSNK DQTHDQVKTA IDGVRQNYPV 120
  121 EVDTLMHLAH PGPPHGGPGG PGGPGGRGGR GGHGGPGGND SSNSTASTKT SKKNKKNSSS 180
  181 RMCSSKILIV AAALAIAVMA QQDGMQRSQQ SYGGEGGFGG NQGGFGGQGG NQGAFGGNGG 240
  241 GFGGQDGRGG QGVPPLPFLK NVSEQARREY MAIVTNSTLT ISEIEEQSTT WAETNGVSEQ 300
  301 YSEFTANVTA KLEELKQNVT SVLTNLSSVL NSLETILENE DQTVAAQKQA IEELRQENPE 360
  361 EVDALFFIAQ EVAPKPGRGG NHGGQNGGFT GQQRFSDYST TTIIMKTTLI LLSVVAVAVF 420
  421 AQPPPSGPGG QQNGLGPQGG TTAASGQPQP PQPGQPGGQQ TGSGPGAGQQ PGQGQGGNGG 480
  481 MGGQQGGQPG QGNGGMGGGQ QGGNQGNNPG NFGKGFFQIF NFQLDLKTFN VDGRPDLVQV 540
  541 SVRLNSKNSL DQHEMYSLLA LLFVIFFSGS TLLVQCVGKK KGATSAEGKS STMAPAPGGA 600
  601 PAAASAQGEP EEKKE

Type	Start	End	Confidence
Signal Peptide	1	17	0.97
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	554	0.96
Transmembrane Helix	555	577	0.82
Cytoplasmic	578	615	0.87