YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-130
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKYVVTIA SCFSGLAIVA CLFTVGAIFK DINDLYDNVM DDMDEFKMFA NNAWKDMIPV  60
   61 TRPSLDNQSN LRAIFGREKR QAGQCNCGAQ PNNCPPGPPG PPGAPGAPGD DGHAGEAGKT 120
  121 GINGISLISH EGESGCIKCP AGEAGPAGPD GAPGAPGPDG QPGQDGPAGQ PGAPGPAGPE 180
  181 GDAGAPGDAG APGAPGAPGQ DGQRGTGLPG APGAPGPQGP SGNPGQDGAA GAPGQAGPAG 240
  241 PAGPDGQPGQ AGQDGEAGPE GNAGQPGADA AYCPCPARTG AVENKPETSG YRRRVSKVV

Type	Start	End	Confidence
Signal Peptide	1	27	0.92
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	299	0.99