YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05501
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLTALDELV ELRAMAEAEL LCAHYETYTP VRFVLIMVAT VIASLGTIGN ILLLIVFSAK  60
   61 QISNTPATLY PSVLACLDFA ICFEYILLFG VDALVSYLKI ESLFSLYYVY IVPAYVMARI 120
  121 TQLAIPYMLI FATLERLFWT SKNKSNLLKA FHSTTGRHIT VIVSLIMCIL LRSPSAFAIR 180
  181 VDEYPKCPDF FRTKTTNPRE WALESQLYHF FDFQVMTIAQ TLVPFVLLVG LNLIIVRRMC 240
  241 SDSVQKEKLP EPTEVCFKED RLLTQITPVH KSSTTIGLSF PPLKSMSPAV RSAVFTMAAI 300
  301 VTSYLISNIL HLSLTVLERS GHQILKSEED PQMSSTFHTF FSDLVSFVYM FTSAIRIVIY 360
  361 YLCNPKIRGD LIDFFANRKN AVYL

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.84
Transmembrane Helix	33	57	0.90
Cytoplasmic	58	66	0.79
Transmembrane Helix	67	88	0.86
Non-Cytoplasmic	89	114	0.71
Transmembrane Helix	115	134	0.86
Cytoplasmic	135	153	0.83
Transmembrane Helix	154	176	0.83
Non-Cytoplasmic	177	215	0.93
Transmembrane Helix	216	236	0.93
Cytoplasmic	237	292	0.96
Transmembrane Helix	293	312	0.92
Non-Cytoplasmic	313	339	0.91
Transmembrane Helix	340	360	0.85
Cytoplasmic	361	384	0.88