YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sfxn-1.4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQILSKCTE LPDISRPRWD QNTFQGRVNY FFSTANCLNL FVSNAKLEKA RNIVLEYKQG  60
   61 KYDPNMTVDE LWKAKTLYDS AFHPDTGEKM FILGRMSAQV PCNMLITGGM LTFYQKLPHV 120
  121 IFFHWVNQSF NAIVNYTNRS GTHKQDDRTL ILSYCGATTG ALSCALSFNY MLKKWKNAPP 180
  181 ILARLVPFAA IAFANAINIP MMRNKEFTNG IPVEDGEGRT MGFSTVAPGH AIPQVVLSRV 240
  241 GMAVPNMVLG PVILEQLSKT AWYTPGMAAP LQTLLCGFML AFSTPICCAL FPQKSSIQVD 300
  301 KLELSLQDHI NKLANPPKVV YYNKGL

Type	Start	End	Confidence
Cytoplasmic	1	98	0.91
Transmembrane Helix	99	115	0.74
Non-Cytoplasmic	116	149	0.72
Transmembrane Helix	150	172	0.89
Cytoplasmic	173	180	0.75
Transmembrane Helix	181	202	0.87
Non-Cytoplasmic	203	267	0.62
Transmembrane Helix	268	291	0.80
Cytoplasmic	292	326	0.61