YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-132
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNFICAAV SVSSILVVGY ITAGLLIFAD FRTFYSTALD DVAEFNKFAT EAWDDMIEIN  60
   61 RSVVRQKRSG ESKCGCMNKV NNCPPGPAGP PGEPGAPGDD GWNGDAGQPG PDFPLFDQSL 120
  121 IYQRPPCIRC PVGEPGPPGP DGEPGEQGPP GPPGVDNFEV GHDGPPGVEG EPGDAGDQGE 180
  181 DGEPGVDGRP GASGIREIGM PGAPGAPGVA GAEGLPGKDG EPGIPGPEGE EGPPGAAGLD 240
  241 GERGDEGEPG PEGPPGIPGP DAAYCSCPLR SARLVF

Type	Start	End	Confidence
Signal Peptide	1	23	0.51
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	276	0.90