YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05352
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLLNIFIL TSIISCVSSY KILLYSNLFG HSHVKVLAAA ADILTDAGNN VTVLMPVFDN  60
   61 NLRNKTSLKS TKNTIFVEAG PNVEELMSDM RQFLANAWKE DTGNPITMMK AAQDMGTAFA 120
  121 EQCTKVISEP GLLEKLKAEN YDLAITEPFD TCGYALFEAI NIRAHVAILT ANRFDHVTDV 180
  181 IGQPIASSYV PGTQSETGDR MTMGERLGNY FQFLLPKVLY PSRDLGGQEV LPEASFILTN 240
  241 QIPLLDFPAP TFDKIVPIGG LSVKTEKKNL KLDEKWSKIL GIRKNNVFIS FGSNAKSVDM 300
  301 PDEFKNSLAD VFKSMPDTTF IWKYENTSDP IVNHLDNVHL GDWLPQNELL ADPRLSVFVT 360
  361 HGGLGSVTEL AMMGTPAVMI PLFADQGRNA QMLKRHGGAV VIEKNNLADT HFMKETLEKV 420
  421 IKDPKYLENS KRLAEMLTNQ PTNPKETLIK YVEFAARFGK LPSLDNYGRH QSYIEYFFLD 480
  481 IIAILAVISL FSLYISYIIL RAVIRKIFFS KCSEVKSKTE

Type	Start	End	Confidence
Signal Peptide	1	19	0.91
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	476	0.98
Transmembrane Helix	477	500	0.89
Cytoplasmic	501	520	0.91