YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-148
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEEKLIVGI STAISALAVF GWFFVIPSLY NTISAIHDEV SSGVSLFRDE TDLAWTELMD  60
   61 VQISVSPPSY PRDHPFSSII RQKRQSFASL PEWCQCEPTK PICPPGPPGQ PGQQGQKGPP 120
  121 GVPGQRGQDC TIVYAPIICP PVSQECVKCP PGPVGAIGPM GPIGSMGRAG QPGYSGPRGN 180
  181 DGFPGLPGPP GENGQPGQSG KDGQPGRNGA DGKRGYGAPG APGAQGKPGP SGPPGIDGYP 240
  241 GQNGWKGQQG VPGQDDFPGT FGEPGAAGKQ GYPGLPGSDA SYCPCPNRSA NFHTK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.80
Transmembrane Helix	7	26	0.87
Non-Cytoplasmic	27	295	0.93