YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-150
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEEKLLVGI ASLASTVAVI VCLVVIPSLY STINEVHEEV LDGVKIFRAE TDAAWVEMLD  60
   61 VQVMVSPPSK PKENPFNSVF RQKRQTFSGL PSWCQCEPAK PRCPRGPPGP PGRPGQRGTS 120
  121 GSPGPRGQDN HQVHAPIQCP RQQPGCVKCP RGPAGPTGSI GQAGRPGPDG RPGQPGRKGN 180
  181 NGRPGQPAPQ GNAGHPGRDG EPGQPGNPGK DGRKGRGHPG TAGRPGQPGK QGSAGNPGRK 240
  241 GERGQDGQPG PGGRPGQPGN RGSDGHPGTP GGRGLPGPDA AYCACPPRSS VFVKARH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.47
Transmembrane Helix	7	29	0.48
Non-Cytoplasmic	30	297	0.97