YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-149
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEEKLLVGI ASLASTIAIL TCVVVIPGLY STINEMHDEV LDGVKMFRAD TDAAWVEMLD  60
   61 VQVMVSPPSQ PKENPFNSVF RQKRRSTFSG LPAWCQCEPT KPKCPRGPPG PPGHPGQRGI 120
  121 PGIPGRNGQD NYNTIRAPAC PPRNQDCIKC PAGPPGPSGT CGQVGRPGPD GRPGQPGRRG 180
  181 NDGRPGQPGP QGNAGQPGRD GNPGQPGHPG KDGRRGHGSP GAPGRAGQPG RQGAPGNPGR 240
  241 PGERGPSGPC GPAGRSGQPG NRGSDGHPGA PGNPGLQGSD AAYCACPTRS VMFLKRH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.55
Transmembrane Helix	7	30	0.57
Non-Cytoplasmic	31	297	0.94