YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-151
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHTNFLFAT ILLIVFAVLT ILASIFSVFN EIENFEITSL EDLKTFEKYS DDAWNLITES  60
   61 IREKRAVYRI KLPPRHGYGQ PRYVTIPPTN SYAVPEVGGS MPLICPEGPP GRPGHPGHPG 120
  121 EDGSAGQPGS PGGVGVLLSM KLPYNGCIQC PMGPQGQPGR PGLMGHPGDV GVTGMDGIPG 180
  181 GRGLPGYPGM PGDNGSGGAN GHDGATGQPG RSGTRSYGSP GPAGSPGRVG RGGPPGPDGG 240
  241 YPMSGEPGSS GPQGKAGQPG GPGVDGHPGR PGGSGRPGPD SGYCKCPQRG KTDEFSNYNT 300
  301 KASTPTEKPE ASSDWRRVRK VKVSA

Type	Start	End	Confidence
Signal Peptide	1	23	0.78
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	325	0.99