YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-10
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLAAVLSML RYVGGSDDRD FVDRLHSYFT CNLLIGLAVL VSFKQFGGKP VECLVPDIFS  60
   61 SSWEQYAENY CWASDTYYVP TNEPVAGLQS DEKRQRKISY YQWVPFFLLL EAACFRLPSL 120
  121 LWKYLAGHSG IKINEIVKLS SDPNNIKPDI KRANIKSLTV HLQGALRFHR RLQKKQIRPH 180
  181 RFLWLFNLPY SAFFVTAMYL CTKFFYLANV CLQLMFMNRF LETDKYKWYG MGALVDLLNG 240
  241 TTWEQSGMFP RVSLCDFDVR VMGNMQEHTI QCVLVINIFN EKIFILLWFW YLALLVFTFG 300
  301 SFFYWLLVSL WRHLNVRFII RHLEMSDIAF DSSEDGAQEK VNRFISNYLK SDGVFVIRMM 360
  361 TLQSGVIFGT DLVQELWRNF HGSEPQLKRS NSAPKIEERE QWWPAYPSLV NPINPWRYRD 420
  421 ENQANALRWR RALGANVDNS IATQDLMEKL LPQNAHMRPS DDELLNRQPI AVQASYIDDE 480
  481 SDGKLKNEEK QNQQNATQPP YCYTNQNPTP YQNQNQIQNQ NQYSNYYRTP SLSRGTDSRP 540
  541 VSTATDTDQT KKQSMSTFK

Type	Start	End	Confidence
Cytoplasmic	1	102	0.76
Transmembrane Helix	103	120	0.56
Non-Cytoplasmic	121	185	0.52
Transmembrane Helix	186	210	0.77
Cytoplasmic	211	285	0.44
Transmembrane Helix	286	308	0.92
Non-Cytoplasmic	309	559	0.51