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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7507925
Protein type: Transmembrane
Type Confidence: 0.64
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIYSKLLKE GKWSDYKLQQ DQLRSDAYAA GVDDYEHAGY VGKITVGSPP QEFRVIMDTG  60
   61 SSNFWIPDST CDTKATSCHK VLPAPNYSAI PGNFFPKFGP FQLLTQLLPT SNPKFAQVLP 120
  121 NFNNSSYGSD SASGILGFDT VSFGGISESQ LIVPDTVVAT AEDIDGIMGL GFLANSQQNI 180
  181 YPPFVNAVGQ KLVDPIFHVY LGNRPNRAGQ ITFGGQDTQN CAKVKQYHPL TTGAAYQFYM 240
  241 TSVSSGAYSA RNGWTALSDT ASSIIYGPKA IVAGIADAAG ATNLFLLLAL VAAALAAVVQ 300
  301 VPLVKIEPYR NRLIREGRWV QYRKDREIRR FMMNKQSNDM SVGQYVNDYE DEAYVGNITI 360
  361 GTPQQQFKVI LDTGSSNLWI PDITCGTKPE NCSTVPACRG IICQFECDDQ ACCGAGANYT 420
  421 DSCFYQNKFD ASKSSSYKTN GRNFIIEYGT GSARGFLGQD TITFGGIGEP QLAVPNTVFG 480
  481 QATSLAAFFE GQPLDGILGL AFKSIAVDQI TPPFINAINQ NLVDLPLFTV FLEHEGDQNG 540
  541 VQGGVYTYGG IDTKNCGPVI AYQPLSSATY YQFKMSAIGS GSYHSSKGWQ VISDTGTSLI 600
  601 GGPKAYVSAI ADAVGATWRD DYGVYILPCS AKINTLDITI GNQVYNIDSS NTIIPLGDGS 660
  661 NNCIYAIFPF SSGGFGPSWI LGDPFIRQYC NIYDVGTQRV GFAKSLQSK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle