YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04864
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.70
Transmembrane Helix	17	39	0.86
Non-Cytoplasmic	40	57	0.66
Transmembrane Helix	58	80	0.89
Cytoplasmic	81	87	0.59
Transmembrane Helix	88	110	0.88
Non-Cytoplasmic	111	114	0.50
Transmembrane Helix	115	139	0.86
Cytoplasmic	140	145	0.64
Transmembrane Helix	146	168	0.85
Non-Cytoplasmic	169	172	0.50
Transmembrane Helix	173	188	0.51
Cytoplasmic	189	350	0.80
Transmembrane Helix	351	372	0.70
Non-Cytoplasmic	373	388	0.59
Transmembrane Helix	389	407	0.64
Cytoplasmic	408	426	0.92
Transmembrane Helix	427	447	0.91
Non-Cytoplasmic	448	454	0.80
Transmembrane Helix	455	479	0.87
Cytoplasmic	480	487	0.81
Transmembrane Helix	488	510	0.89
Non-Cytoplasmic	511	516	0.85
Transmembrane Helix	517	540	0.90
Cytoplasmic	541	556	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSAPIKGKL VPLPPDGGWG WVVVIGSFFI HVFADGFVYS FGILAEKLMI EFNSNNTMTS  60
   61 LIVSMLTGFT LGAGPLASAV CNKYGCRITT IIGAGVAFVG CLLSCFATEI WHFVISVGVI 120
  121 MGIGFGLVYC PAIVIVTMYF ESKRSLATGI AVAGAGVGAV VFGPINTFII SNYGWRYVFV 180
  181 LFLFFALVPD DDDDGEYNDV FEDEVKKIDY NKRFEEKVSL LSPPQVLERS MSQCCDIQKN 240
  241 NQHARPSSSV GAVDLEPLLR PRCGTIGERN SGYLNRKDVF YTGSISNVAE FRANPDKYRS 300
  301 TGSLHTALNI HTHHTGTVGD DRESGHGCDQ SLDGMNEKKE TDFMDDIEGT FLLFAISNLL 360
  361 TSVGFNSPLY FLPLHVTNIL SDNNVSGNIL SVYGTANTIG RLIFGVVADQ KLPLPAGLGD 420
  421 DTARNRLWMY NISLTICGIV TAFCYKFDGY ILLDIYAVLF GFTIASYVCL TSVILVDLLG 480
  481 LDKLTNAFGL LLLWQGVGTV IGPLVSGYLA DLTGNYTLSF VFCGINLMVS GLMLFVIPYF 540
  541 KRKDDVDVSN KQRSSQ