YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04848
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGALQLLLF VGTVTLVASK LHESPYVTEC FDGHYNFRGV CFQCTPCGDF MYELAKCTDT  60
   61 SNTVCGWCGN KPNLDKISDE VLVSYQTKCL MSSLDFIGMT KLKDELVNVF DDEKDSEEVE 120
  121 ELPIKDNFIK GENLEMIDSN EINYDMARNS LEDVYDSQEH QLPDPTYEEG DDSSSSEEIG 180
  181 EEEKTDENEI GSEIVSEKVK AYMIEKSEKV PSSVKIAKGK TTIVSHEEAE ATFREIEALP 240
  241 NPVRKINQDD YDSSEESNER EIKWDNWVDD QVKPIRTNVE VVEAEEIEEF DQLIAKSLKN 300
  301 RRKILNDETE SSPLFIKNLG SVFVICMGMI IVVTILSITY ALMRAERKEF LGVPTDSQDY 360
  361 HMIIDSSNYI EKLESKEKQA SRHVHVNPVF DV

Type	Start	End	Confidence
Signal Peptide	1	19	0.97
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	318	0.99
Transmembrane Helix	319	342	0.91
Cytoplasmic	343	392	0.99