YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: kcc-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.31
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFFSSYLKA HITPGPLERA QSSSHGGHGA KADLGVLLGV YLPTIQHILG VTMFIRLFWL  60
   61 VGIAGLGQTF LLLFLCCFCT FLTCISISAV ATNGVVESGG AYFMISRNLG PEFGSAVGIL 120
  121 FYLANTVATS MYLVGGVEIL LLYIFPGLTF GGVEGQHDTS MFGTMTNSLR FYSTILLLIE 180
  181 FAIVAMGVKF VQMLAPVSLV CVILSILACY AGGVTKTIYP DSGQYVCMYN DRLLQSSAVL 240
  241 NESIPLDEIC NYCNINNTFL ADRVCGGRCN STTIPHVSPF RCINGFPGFQ GGQTLLENLG 300
  301 PNYLEKGEAA HGTQADTKSD VYQDVRTSFF VLLAIYFPAV TGIFTGANMS GDLKNPQASI 360
  361 PAGTIAANLT TSFVYFSLAF IFGGAIDNAV LRDKNGQSVG GQMVVALLSW PSPWVLLIGS 420
  421 FLSTFGAALQ CLCSAPRLLQ AIAKDEVIPL LSPFKKVTAN NEPFLGLILT TIIAEIAILM 480
  481 GSMDTIAAVV DFFFLMCYAF VNIICTLHSL LGAPNWRPRF KYYHWFLSLL GAVLCFFIMF 540
  541 STHWDYAIVA CLLCLVIYKY VEWKGAKKEW GDGIRGLALT TAQYSLMKIE DKEPHPKNWR 600
  601 PQLLLLLSMQ WSKEIIDVRY LNLLNLASQL KAGKGLTVVT AFLQGDPTSP DDKKKGEQVK 660
  661 ARMDFDMNQV RLRGFAKTLV HSEDQVRGSM STLVQSVGLG GLKPNTMLIS WPVHEREEDM 720
  721 TEYNTFIEKV HAASINDMAI VVAKGIIDFP SAVFRMSGMI DVYWIVHDGG LCLLMGYLLK 780
  781 QHKVWRGCKL RVIGIAQESD NNVKMQEDLQ KYVYQLRIDA KIMIVELADP EISKNAFERT 840
  841 LLMEERTMMM RDLQKVSGGG MSLSLPPANA PRAPSPLVTS ERRANSKDSD EGTPTESEET 900
  901 TEKKSTSTDN EQANQETKTK KERMKALDRS KVSKMHTAVR LNELLLQHSA NSQLILLNLP 960
  961 KPPVHKDQQA LDDYVHYLEV MTDKLNRVIF VRGTGKEVIT ESS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle