YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-26
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVAIKESEI QARSRIIKNH LTERNNCIVL KIDTHMSKVE DMSPFGFHFE FDEKKYKERK  60
   61 KQIRKQKITR FFAWLAYYHH KFGIRHVTLI ALLVGYVFLG GFMFEKLESP RELEDLKETI 120
  121 VLMQGIIDEE TTDIINVTLS TNGTDRVNKL AKLIKRYYKT MLEAEGRFHG SVWHKAENLD 180
  181 MHLMWYFSSA TFYSMTLFST IGYGTISCQT VWGRTLSMIY ASIGLPIMLV VLGDIGEWFQ 240
  241 KILTNGYIFL LLKYKKLRKQ PVNRKKNEIL LPMWLALFLV LAYILICTLT IKMFDHNEGN 300
  301 KPGIGFFDAF YFTFISLTTI GLGDVMPYNI QYSPFLAAAF LLGLALISIV NTSIYAQLYQ 360
  361 MFFNMINSVE DQLDRIHSSN HKGPGYKVFH DMEPVFRMLV CTFPPSHPQT RIKFAAVVRD 420
  421 SFRRDKEKKR ESNTSDQIKL RTRTESDIPA HDGFHLWMTK RAKKRQMEQE NEDLHAARRR 480
  481 APTLGAFGGF DMNLFKRGRS NTSPFEKNDS EETEESDVE

Type	Start	End	Confidence
Cytoplasmic	1	81	0.82
Transmembrane Helix	82	104	0.86
Non-Cytoplasmic	105	182	0.78
Transmembrane Helix	183	206	0.85
Cytoplasmic	207	215	0.54
Transmembrane Helix	216	236	0.85
Non-Cytoplasmic	237	269	0.54
Transmembrane Helix	270	294	0.85
Cytoplasmic	295	303	0.51
Transmembrane Helix	304	326	0.84
Non-Cytoplasmic	327	334	0.47
Transmembrane Helix	335	356	0.92
Cytoplasmic	357	519	0.58