YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04749
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVEVCSVEN DRGLSRFFGF YVISSKHERI NRRAGCLEII LSSIMIKTIL LLAFVASTSA  60
   61 FVIPFKVHAA VTNITKGGQT LEQTSTFFVA NLTMGTPGQL FTVVIDTSTA DIVIPDMSCK 120
  121 TANNCYNKRR FNQAKSSSYY AYGNKYTYKN NLGTFQGFDA KDTVVIGDRK TDLITIPGVK 180
  181 FMQATDLGLL MDGLGADGIL GLGFTASSQI GGNSPFVQGV NAGDISGTFY SIWLEHFNQT 240
  241 DDLGTHGVIY YGGFDPVHCA PNPTYVPLAS AYAYQLTMSS FKVVGSSATN SNNKYIQTYL 300
  301 DTTTAQIGLP KTYISQVFDS LGISTNVMNA IYPTIVPCNT KITLTFGFVS GTTVSITERD 360
  361 LVISFFGTCR LQIIPTTDRI ILGLPLYRGR CTYFDPIMQR VGFTPALLQD

Type	Start	End	Confidence
Cytoplasmic	1	35	0.88
Transmembrane Helix	36	56	0.74
Non-Cytoplasmic	57	410	0.91