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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: vit-1
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSIIIASIV ALAIAFSPAF ERTFEPKIDY HYKFDGLVLS GLPTASSELS QSRFSARVRI  60
   61 QAVDDRHIHL QLVNIHMAAS HLPESEQIPS LNSMEQRELS EEYKQMLKLP LRAQLRNGLI 120
  121 AELQFDKEDA EWSKNMKRAV VNMISFNPIA PRNEIEKIES SYDKEEQSEE NTSFFTNEKT 180
  181 LEGDCQVAYT VIREQKKTII TKSINFDKCT ERSEIAYGLR YSSECPECEK DTVLIRPQTV 240
  241 YTYILENEEL KESEVRSLYT VNVNGQEVMK TETRSKLVLE ENHSIKSHIE KVNGEKESII 300
  301 YSSRWEQLVE DFFKNGDKAE FAPFEKFPLD KKMHLIKTIT EQIQEVENNI PETSHFLARL 360
  361 VRIFRTTSTS QLKEIHETLY VKADKKIQSL MEHALAIAGT KNTIQHILVH IENEDIVPLE 420
  421 AAQLLKSIQE TPFPSQTIAE ALIKFAESRV SKNNQVVRQS AWLAAGSVVR GIVDYKNIRP 480
  481 LVREDKRELK EKFLRVFMQQ YKDAETTYEK ILALKSIGNA GLDISVNQLN EIIVDKRQLL 540
  541 PVRKEAIDAL RLLKDTMPRK IQKVLLPIYK NRQYEPEIRM LALWRMMHTR PEESLLVQVV 600
  601 SQMEKETNQQ VAALTHQMIR HFAKSTNPCY QRVAIVCSKV LSFTRYQPQE QMIASSYAQL 660
  661 PLFLQNSFSG AQFDFAAIFE KNSFLLKDLH ASLDAVFGGN WNKYFAQIGF SQQHMDKYVQ 720
  721 MALEKLESIE KESTTVVRGR RIQTGITLLK ELALKMNIRA RPANYNEKDA FAMVYLRYKD 780
  781 MDYAILPVDT QLIEKLIEKY ISNGKVQFSE IRRLLNQEHE FETHHAAYFY EAIRKFPTTL 840
  841 GLPLIVSGKI PTVFSAEGQF SLGLEETELR LTVEARPSVA ATHVYEMRMF TPLFEQGVKS 900
  901 VQSVRAYTPI KIQAVVGMKR NFEIVYKVVV PENQKSIISL TTRPVVFLRF PGFSKFEYIE 960
  961 AEERTVVVPQ WQQKTQEIEK VFNFLGLEVS TRGNILNQHT LENWLLAEQD FEVSVENKYR1020
 1021 PAEFTARLTV GQLEKTELSQ IKYNKIFEKE FELEQENTES RREYFTKMVK SIQKEQGYKS1080
 1081 VVSLRLEAPR DYTMNTEVTT VCDKQVRMCQ WEVEIRRSPI LEETKEWTLR SQLLVVRPEM1140
 1141 PSSLRQLHDQ PHREVQLSLT STWGSQKKSE VTVNAQLQQS KEQKKYERNM DRHFNGMPEY1200
 1201 ELLIKAARLN QINAVAEYKL TRETEQVLAR YFDLVKAYNY WTVSSRPENN ENDRVVVQLT1260
 1261 VEPMSRQYVN ITMQSPIERV ELKNVQVPRV YLPSIAQRSV KHLLNEASGS VCKVQKNQIR1320
 1321 TFDDVLYNTP LTTCYSLIAK DCSEEPTFAV LSKKTEKNSE EMIIKVIRGE QEIVAQLQNE1380
 1381 EIRVKVDGKK ILSEDYSAHQ IERLGESDIV IELPEGEVRF DGYTIKTQLP SYSRKNQLCG1440
 1441 LCGNNDDEST NEFYTSDNTE TKDIEEFHRS YLLKNEECEA EEERLSEKKN YRKYDERKYE1500
 1501 SEEYSFEETY DYEQENTNKK QKNQRSQKKS DLVEKTQIKE FSHRICFSVE PVAECRRRGY1560
 1561 EAVEQQQRKV RFTCLPRHSS EARRLVKEAR QGTVQLDDHK ISFVHSVQVP VACVAY

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