YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVFRVLNTV PYTNRTGAKD LVASIHSFLT SNLLVGLAVL ISWKQFGGTP IECMVPLDFT  60
   61 SAWVQYSNNY CWAQPTYFIP FTEELVEQVV DPADVVADGI TIGNGGNRPR FVKKGGEKIS 120
  121 YYQWMSFFLL FEAACFRLPC FIWKYFASQS GMQVGEILRV ASDENNAVPL VKKANIDALC 180
  181 IHLRGVLRFQ KRLKLKKIVP HKILRFLNIK YSAYYVTFIY FVAKVAFLLN VILQSKLLNK 240
  241 YMLPHDRQQN FGFDMWKTIF YGSTNGNETW RENGVFPRVT LCDFETRDMG NVQMHTVQCV 300
  301 LLLNLFTEKI FVFLWAWYIL LTAFTVGNLF SWLFAVFNET YNEHFILNHL EMCETPFDKD 360
  361 DLKNREHVTR FITLYLGTDG LFLLQLIAQH ADVVFTTELI AALFKTYIEI EAQRATLKQM 420
  421 NAVLPLLRPN DESQVESGKN TAPSTSHNVR RRGTEQLEKN VKSRQGSLST QLRPFNSFEE 480
  481 PDQPTKKFDD SSSEDENSKK GSKKPSPTKK KASSKNSPQS SSNSRRPSLA HTASPAFTHH 540
  541 HEPDSKIPKT AEKKHW

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.38
Transmembrane Helix	21	41	0.64
Cytoplasmic	42	120	0.60
Transmembrane Helix	121	143	0.71
Non-Cytoplasmic	144	212	0.65
Transmembrane Helix	213	233	0.80
Cytoplasmic	234	312	0.74
Transmembrane Helix	313	336	0.89
Non-Cytoplasmic	337	556	0.65