YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04656
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.83
Transmembrane Helix	7	27	0.81
Non-Cytoplasmic	28	56	0.93
Transmembrane Helix	57	80	0.89
Cytoplasmic	81	88	0.89
Transmembrane Helix	89	107	0.94
Non-Cytoplasmic	108	116	0.77
Transmembrane Helix	117	139	0.89
Cytoplasmic	140	150	0.84
Transmembrane Helix	151	171	0.87
Non-Cytoplasmic	172	181	0.75
Transmembrane Helix	182	202	0.91
Cytoplasmic	203	321	0.98
Transmembrane Helix	322	345	0.90
Non-Cytoplasmic	346	357	0.85
Transmembrane Helix	358	382	0.84
Cytoplasmic	383	389	0.89
Transmembrane Helix	390	411	0.93
Non-Cytoplasmic	412	422	0.85
Transmembrane Helix	423	446	0.87
Cytoplasmic	447	455	0.87
Transmembrane Helix	456	478	0.89
Non-Cytoplasmic	479	485	0.83
Transmembrane Helix	486	508	0.91
Cytoplasmic	509	569	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTSRYLITV TTVVLGGSAQ FYSYGVVNPA QVVITDWINQ TYIDRYKAPL SLTVSNVIWS  60
   61 FVVSSIAIGA ILGASFTRII GEKYGRRNGM FFNGILNVFA ALFELVAKRF SSPELLIFGR 120
  121 FVYGINMGLS SGLVPMYLME ITPYKYRGPA GTLHQIAVAF SDWFSLLIGL PEVLGDQNNW 180
  181 PLAFALPGLP ALALVCILPF CPESPKYTLG TKHDRDKALK DVELLIGKEQ APHMFESIVR 240
  241 EVALDEVSFF CVYLYTRISL LGLYLNFANH LATTKFWKKN VIHTALKLKL LSSKLRGNAK 300
  301 LHGYFQGDGT FRELFTRPDL RIPLAVSIIV MIAQQFTGCT AVFAFSTDMF LNAGLTPVIA 360
  361 RFSTLAIGIV YFLFACTSPF LIHKVGRRWL SLFQLASCMV ALMLLSLFTF LQNYENIEWA 420
  421 RYGTIFSLVF YMCVYGVGSP IPWIIASELF TQQFRATAVT VSVFVAWTFA FIVSTSYLPF 480
  481 QQLVGITFSY FPFIIGLAVF GIFIYVLLPE TRDRPMVEIV TEVHHRTASL SAGRPWDASR 540
  541 PPSRQEVQRL LDTMDPRSYS SYDNSTLED