YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dpy-7
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKPSSGANH VAKATVSLSI ASVLILGAVL TMLSIQLDEA HERLQNRMGS FKFVARNIWH  60
   61 DIVLVKSNGR IKRQYGGYGS DSAQSDNQQC TSCVQLRCPP GPIGPPGVSG EPGMDGANGR 120
  121 PGKPGLDGLD VPLDPEPAFP CVICPAGPPG TRGPQGEVGR PGQTGESGHP GLPGRPGKPG 180
  181 RVGDAGPQGE PGEQGEPGIK GPPGDDSIGG TGIKGPPGPP GPRGPKGPPG SNGLPSQNSG 240
  241 PPGPIGEMGP PGPPGPRGEP GPPGPFGPPG DSGEPGGHCP SSCGVQEIVA PSVSELDTND 300
  301 EPEKPARGGY SGGGYGKK

Type	Start	End	Confidence
Cytoplasmic	1	13	0.51
Transmembrane Helix	14	35	0.55
Non-Cytoplasmic	36	318	0.95