YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04524
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHIVLPGCS APEKVLFKPN STFDNFFRKF DELVYKLSTF LITILYFAFN VFHLIILSRP  60
   61 SLISLVVSKE MILIAVCGVL NGIIGILKSV EEIIDHELQC AHSYSYYILV LANFVIFQVL 120
  121 NQIILWEIVY ITFLRATVIL EVRYGMKTEN LKLYMRRFIT VLFTIFLINH TVRIFFHRIE 180
  181 EVTDNDMKVR ELGIPCDSEK IYIIAAFAGD CLRRILLTIA GLTSLIIPIL IMIILSIFLI 240
  241 IELRSSSETL QKTQESSTRQ NSAARALLLF LCFYVLAELP YVLLFSVGLY NPADFE

Type	Start	End	Confidence
Cytoplasmic	1	34	0.67
Transmembrane Helix	35	57	0.89
Non-Cytoplasmic	58	65	0.59
Transmembrane Helix	66	90	0.74
Cytoplasmic	91	99	0.54
Transmembrane Helix	100	120	0.68
Non-Cytoplasmic	121	122	0.44
Transmembrane Helix	123	142	0.67
Cytoplasmic	143	152	0.81
Transmembrane Helix	153	174	0.85
Non-Cytoplasmic	175	216	0.92
Transmembrane Helix	217	241	0.87
Cytoplasmic	242	265	0.85
Transmembrane Helix	266	285	0.92
Non-Cytoplasmic	286	296	0.84