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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: vha-5
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLSRSEEM RFCQLIVEKD AAFNIVAEIG KQPYVQFKDL NPNVNSFQRT FVKDIRRYDE  60
   61 MERKLRFLES QIVKDEIVIP GRVDTGDYTI LPTSELNTLE GTLTELEKDV KSMNDSDSQL 120
  121 KANFMDLKEW DAVLDKTDEF FQGGVDDQAQ EELENLDEEG AVPRVEKGPV NYLVGIIRRE 180
  181 RLNGFERVLW RACHHTAYIR SSDIEEELED PGTGEKVHKS VFIIFLKGDR MRSIVEKVCD 240
  241 GFKAKLFKNC PKTFKERQSA RNDVRARIQD LQTVLGQTRE HRFRVLQAAA NNHHQWLKQV 300
  301 RMIKTVFHML NLFTFDGIGR FFVGECWIPL KHVEDVRKAI EVGAERSGSS VKPVLNILET 360
  361 SVTPPTYNET NKFTAVFQGI VDSYGIATYR ELNPAPYTII TFPFLFSCMF GDLGHGCIML 420
  421 MAGLWFVLRE KNLQARNIKD EIFNMFFGGR YIILLMGLFS IHAGIIYNDM FAKSFNIFGS 480
  481 GWKNPYNASE IEGWINRTEH GKEMLVELAP EDAYDHAGGP YSFGVDPIWN IAENKLNFLN 540
  541 SMKMKLSVIL GISQMTFGVI LSFFNHTYNK SKIDIFTVFI PQMLFMGCIF MYLCLQIILK 600
  601 WLFFWTKEAT VFGQIYPGSH CAPSLLIGLI NMFMMKDRNA GFVVDGGKVN GEYREVETCY 660
  661 LSQWYPGQSV IEMILVVIAV ICVPVMLFGK PIHHVMQQKK KAKELHGNAT VRANVVSDSS 720
  721 EIVLNGGSKK EGAAHEEHGH GGHEDESFGD IMVHQAIHTI EYVLGCVSHT ASYLRLWALS 780
  781 LAHAQLSEVL WHMVFVTGGL GISGTAGFIA VYVVFFIFFV LTISILVLME GLSAFLHTLR 840
  841 LHWVEFQSKF YLGLGYPFVP YSFKTALQEA EAA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle