YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04450
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.97
Transmembrane Helix	42	63	0.86
Non-Cytoplasmic	64	77	0.80
Transmembrane Helix	78	100	0.90
Cytoplasmic	101	108	0.81
Transmembrane Helix	109	128	0.94
Non-Cytoplasmic	129	138	0.71
Transmembrane Helix	139	159	0.90
Cytoplasmic	160	171	0.90
Transmembrane Helix	172	194	0.91
Non-Cytoplasmic	195	210	0.87
Transmembrane Helix	211	234	0.87
Cytoplasmic	235	264	0.96
Transmembrane Helix	265	288	0.80
Non-Cytoplasmic	289	308	0.84
Transmembrane Helix	309	331	0.90
Cytoplasmic	332	338	0.90
Transmembrane Helix	339	358	0.95
Non-Cytoplasmic	359	394	0.95
Transmembrane Helix	395	418	0.88
Cytoplasmic	419	431	0.86
Transmembrane Helix	432	453	0.87
Non-Cytoplasmic	454	459	0.75
Transmembrane Helix	460	479	0.94
Cytoplasmic	480	498	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGDTIETGE KILDDGSIGQ SNFDQTEAML PTPSDKTDWK SIYLAGSCAF IQATQFAIFF  60
   61 TSMYPYILTL EHNVTQTSFG IVVAMYSVSQ AIFSPVFGFW SNRIGQVRFP LIVGFIVMAF 120
  121 GNITYLSLQY LSSNHLYVMM LARLIAGGGT GNMSLLRAYA STASTSKDRS RAIACVSGGI 180
  181 ALGTMMGPGL QLLFSPLGEN GINILGLNIS IYTSPALFCL ILNVTGLLIV KLAFVEKYII 240
  241 NHGKNIVQDE ENGEKKIKKL ASPDFIAILL CIITRFSQIF LNTTIESIGS AYTMMMFGLE 300
  301 KEESVSINAG VHTVAGSIAA FMFICFIFTG VRRYMKNRVF TFISLSIPLV WLIATYPYKF 360
  361 YSDHVQLMTN GSNANCDTEK YSWCTDLTKV NEYVYYIGFI MVFGVAFSFM NITVTTLFSK 420
  421 VIGPRPQGTY QGVYQMAGSF GRMLAPLLMS YVYTLYGPSI PWLILIVNLV VLISAWIILR 480
  481 VRMVPFEKYE TKKIEPLN