YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-110
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEYSHLRI QRFIAFSVAI VSLVLTVGAM VTLPLAYHYV NQLRNSLERQ FVECNDVVRT  60
   61 IYEGVDELSV LIATSNHTRS IRGAKPRRRF DEDETTGTCD GCCIPGAPGP SGTPGRHGRH 120
  121 GAPGAPGRPG NPGEPPRGPC DPTLASPCDC PAGEPGEPGP RGSPGNNGLP GLKGRRGFDG 180
  181 LDGRPGRPGK TGIDGVPGTK GEDGADGEPG EVDTSDVGPP GDDGDEGQSG EAGQPGNDGR 240
  241 DGKPGQVGPP GPPGKDGVDG ENGNDGDLGE AGIQGRPGEE GICPKYCAID GGVFFDSGSR 300
  301 RRRT

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	38	0.84
Non-Cytoplasmic	39	304	0.98