YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pes-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLYFAGPPK VDDIPSNEYI FTQYTIGETY TFEVHLDETT QNDYIINWCN MNGDQLIGAR  60
   61 GCVNCNQCGY ESVETHSYNR PGAIKRTLVP FVAAHTTINF ECEIEMYICS GCAERSCETS 120
  121 PLALTSKLTP FGKSTTVALM YPPAGYAMPM GAYPIPIPPN IYPTPPFGGF HMPPHSPPHV 180
  181 QPPPVVNPGA VGTYTGYGGA WPWWVWLLII LLLLLLLCCL LALCFAAFMK RKREKKAAAV 240
  241 TVVDGKDCAT GTDRVSVTCV GTDTQDIVKV QPAVVLGADS LQSHHQQHHQ HNQYSRNQAE 300
  301 YDQGSVMAGG TYSLREGMIH EGYTRTLPRE SYSTNDRYAS RDRFERQSQD KYTDRSSYRN 360
  361 FAYERDMGRV EPMDGFDEVE TRERTYCLSD DDQEIVEKNV KRTHTTRYVT ESREYDQDHD 420
  421 NEERMRGDEY HHATYTHSLP IPYPYFAHHW PAIFSFESLF FLTFLVM

Type	Start	End	Confidence
Cytoplasmic	1	136	0.98
Transmembrane Helix	137	157	0.83
Non-Cytoplasmic	158	203	0.94
Transmembrane Helix	204	228	0.92
Cytoplasmic	229	445	0.99
Transmembrane Helix	446	466	0.60
Non-Cytoplasmic	467	467	0.68