YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04396
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.84
Transmembrane Helix	42	61	0.69
Non-Cytoplasmic	62	74	0.61
Transmembrane Helix	75	94	0.64
Cytoplasmic	95	110	0.76
Transmembrane Helix	111	133	0.85
Non-Cytoplasmic	134	145	0.83
Transmembrane Helix	146	169	0.85
Cytoplasmic	170	185	0.87
Transmembrane Helix	186	206	0.92
Non-Cytoplasmic	207	224	0.88
Transmembrane Helix	225	245	0.96
Cytoplasmic	246	275	0.91
Transmembrane Helix	276	295	0.82
Non-Cytoplasmic	296	316	0.80
Transmembrane Helix	317	339	0.89
Cytoplasmic	340	346	0.89
Transmembrane Helix	347	365	0.97
Non-Cytoplasmic	366	371	0.71
Transmembrane Helix	372	395	0.88
Cytoplasmic	396	404	0.84
Transmembrane Helix	405	427	0.71
Non-Cytoplasmic	428	449	0.79
Transmembrane Helix	450	472	0.90
Cytoplasmic	473	501	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDEETEGDV VPVRSCDDIV IPRRSIRPDH DISFTKKIAF GIGHFYNDLC ASMWFTYFMI  60
   61 YMEKVLKFQS SRAGMLMLIG QVTDAISTPL VGIFSDSNIL PACFDKIGRR MSWHLIGTVL 120
  121 VSLSFPMIFN KCFLCKSTTS EWLKVLWFVP FIMVFQFGWA SVQISHLALI PELSSVPASR 180
  181 ATMNSLRYAF TVIANLSVYF ALAWLLSEST GHTSIGPWDF SHFRLAGWLV VVLGITVAFV 240
  241 FYAFTREPTN YRRFSRLNSF SSDASELVRM HWTSWFGHVQ FYQIALLYML SRLYINISQV 300
  301 YFPFYITMTQ NYEKKYVAIL PMVAYLSSFS VSMVNSLPVV SKLSKKILYS FGLASGMLSC 360
  361 AVMMLDLPGW KIYALAVGIG IAQAILLITS LSITADLINK NTESGAFVYG AMSFFDKLSN 420
  421 GIAYQLIELW TPAYDALKPH EVSAIFYRRV MVFVPGTCLV LAFLVLLSLA PFKIGERRRA 480
  481 RPEDEQAIME DQDDIYPEIV E