YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mec-2
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATMSSARN SVVSLSSNGS VKVETRLVSN ERSSSIQQEG AMLPSSSSKD DDLLSTSSDE  60
   61 VENMATRTLQ QLEESTSIIS ANSDDDSVKK EKQAEKDVEK GNGKEEKANI QNEFGVCGWI 120
  121 LTILSYLLIF FTLPISACMC IKVVQEYERA VIFRLGRLMP GGAKGPGIFF IVPCIDTYRK 180
  181 VDLRVLSFEV PPQEILSKDS VTVAVDAVVY FRISNATISV TNVEDAARST KLLAQTTLRN 240
  241 ILGTKTLAEM LSDREAISHQ MQTTLDEATE PWGVKVERVE VKDVRLPVQL QRAMAAEAEA 300
  301 AREARAKVIV AEGEQKASRA LKEAAEVIAE SPSALQLRYL QTLNSISAEK NSTIIFPFPI 360
  361 DLLSAFLQRT PPKVEEPPSL PKKIRSCCLY KYPDWVQGMV GSEGGGGHGH SHGGGGGGLG 420
  421 SSQGAFHPSQ AGSGPSTTTT SGRPLLRSMR EAQFHSAAPP ISAPNQSQTS VSQLDPALLI 480
  481 R

Type	Start	End	Confidence
Cytoplasmic	1	115	0.52
Transmembrane Helix	116	135	0.55
Non-Cytoplasmic	136	481	0.91