YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srx-47
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDIIVGFI LLYISTLGVI ANWTVFLFLS KVPSIHKSFG SLTRNQALGD AIQTTTVLFV  60
   61 VVPMVLFDIE FLKINSNIVS FVMLFGYEVS VLSHLLLACN RLCAVTNPLK YQQLYSQRFT 120
  121 IGMLFTANMY AFASIIVLYT SGCRYFWSSE LHMFMYHVSN SCVNFSFYGI FCKYLTIIIL 180
  181 ILLIDLFSIY KARLFLQKTQ QDRISHQVNT KEVGLLVQTC LQGLLFTVEL ICYFIISPHV 240
  241 ENKWAQFFLT TFAFLTIHTC DGTISIFCNG DFRKYIFKNS FTKLSGQLSK VGPRTESHIP 300
  301 Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.80
Transmembrane Helix	7	29	0.91
Cytoplasmic	30	46	0.83
Transmembrane Helix	47	67	0.85
Non-Cytoplasmic	68	77	0.71
Transmembrane Helix	78	99	0.79
Cytoplasmic	100	118	0.79
Transmembrane Helix	119	143	0.84
Non-Cytoplasmic	144	169	0.81
Transmembrane Helix	170	189	0.88
Cytoplasmic	190	214	0.85
Transmembrane Helix	215	237	0.82
Non-Cytoplasmic	238	246	0.74
Transmembrane Helix	247	268	0.79
Cytoplasmic	269	301	0.90