YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	abch-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEKHVLECK SISFMTAISN GTWFSKIYKP PSVFQILKNI SFTATSGEIH AIVGVADSGK  60
   61 TTLLEALTSG AGGDIGGIAM LDKFMLTRRR FNKFCSHINY RNQYPSSLSV RSLLYYHARL 120
  121 CLSSTHTSLE IDHRISELSA MFDVIGYAHD KLEDLSFSAR RRVMTVMELL KDPILTIIDD 180
  181 PTAYLSPLSA YQLIYALHFY AAKFNRIIII TLRNVRSDLS HLLGSATCLF YGEVAYSGQM 240
  241 RLLPNHFKKA GFECPPNENP AAYYLSLLTI DKESMQKVME TQEKATKLVA FRTDNDTSSD 300
  301 ISGSSATGTG VLLDSGRKNP SISTVAAILF RRVLSLIGST PSNSLAGLIA FPVTAAVLSF 360
  361 LRPTSLPSSL FFWKLLTFLY LLLQTIVIFP NYSKTSLLSF RECNLYCQTT SLTIFSIFFL 420
  421 VYSCIQSSLF VGIVLWSFKS EAMFQISLNL FLLSIFSFSI FTICARYLKN CSNIVILQTI 480
  481 IILAFFVSGN GVTGTTTSSS IQYYIGVINP FNYSNFLLSK LLSSSIDNEE CTFPSYMCKL 540
  541 SMNLHSDLYP PWYAPNDVFT NFAILFCLSL TFLVISFFIH LTEPSVQLKK HMKQS

Type	Start	End	Confidence
Cytoplasmic	1	335	0.73
Transmembrane Helix	336	361	0.72
Non-Cytoplasmic	362	369	0.87
Transmembrane Helix	370	392	0.89
Cytoplasmic	393	411	0.81
Transmembrane Helix	412	435	0.84
Non-Cytoplasmic	436	443	0.80
Transmembrane Helix	444	465	0.91
Cytoplasmic	466	473	0.81
Transmembrane Helix	474	496	0.86
Non-Cytoplasmic	497	558	0.94
Transmembrane Helix	559	581	0.93
Cytoplasmic	582	595	0.95