YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04239
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSFVEPLY ADVEQLEPVP LLRHSYQLTV LYTVAYGAVF FTGVLGNTFV VLAVWAHKNL  60
   61 NITTDYLILS LALADLFILW ICLPTTLINS IFTEWLWGQF FCRLSTWANA STSFASVYTL 120
  121 VAVTADRYLA ICHTLKYNTS WDREYTKYVI FAVWLVAAIF GIPNWYNYDL IVWQEGSYGY 180
  181 RLCTSQTDQK LYFLFVNLLL AFIVPFGLIS GLYTRIFITV STHRSLAVDA RAREDRVKLR 240
  241 VATMMLTVII VFACCWLPLY CIFTYFFFFA DQRSDLFQIT SMLIRPIFQW MSLLSSSLNP 300
  301 IIYIAYSHKY RRAFKSILLM PCKTRYERVR STILRRHSRG FKSTATISMS NFGTEPTNLG 360
  361 GASSLLIELD GKQVERSTSD C

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.85
Transmembrane Helix	34	56	0.91
Cytoplasmic	57	65	0.81
Transmembrane Helix	66	88	0.86
Non-Cytoplasmic	89	106	0.73
Transmembrane Helix	107	129	0.76
Cytoplasmic	130	144	0.92
Transmembrane Helix	145	166	0.89
Non-Cytoplasmic	167	194	0.93
Transmembrane Helix	195	217	0.88
Cytoplasmic	218	240	0.90
Transmembrane Helix	241	266	0.85
Non-Cytoplasmic	267	286	0.90
Transmembrane Helix	287	306	0.95
Cytoplasmic	307	381	0.96