YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04226
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEQEEEGPI CIESTFLTMR VMENYLKSFE YFLLVSCVCS TFLQIYVLLK AVKYIRRATG  60
   61 DECLHVFLLS MTMGDLLLTS FCYPIEQLRE QEIIKPPQWI NVAQHFLTWV GLSASSASLI 120
  121 LLNADKLLYF KFPLRYANWV TSFKGVSLAV FVWFGCFVFV FICWYLECFT CEDDCRQLMI 180
  181 LPNKVVMYIV FTVSACIAPS LTSLGVAIYI LNVVTSHRTK LSDENGNSSH ALATRLRTFY 240
  241 FIFMTTIFTV GTLLPYRIYN IQRQLTPRET DEISCGSIIF SWTCLYFVSL NAILNPIITV 300
  301 TVLPQYRFQW LCKRLGSSSS PAAVYV

Type	Start	End	Confidence
Cytoplasmic	1	28	0.63
Transmembrane Helix	29	49	0.89
Non-Cytoplasmic	50	62	0.57
Transmembrane Helix	63	85	0.74
Cytoplasmic	86	104	0.67
Transmembrane Helix	105	124	0.93
Non-Cytoplasmic	125	144	0.67
Transmembrane Helix	145	166	0.91
Cytoplasmic	167	184	0.68
Transmembrane Helix	185	211	0.86
Non-Cytoplasmic	212	237	0.71
Transmembrane Helix	238	259	0.91
Cytoplasmic	260	277	0.67
Transmembrane Helix	278	300	0.78
Non-Cytoplasmic	301	326	0.70