YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04224
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQACLNTTE DQCDCLAFNC PIVYSHSESE KEACYMEHCF ISKRALDDVT LYKVTALYIF  60
   61 IFLVGVIGNT TTCLVMKKHP MMKTHASMYL MNLAVSDLVT LCVGLPFEVM MNWNQYPWPF 120
  121 PDYICNLKAL IAETTSSVSI LTILIFAIER YVAVCHPLFL MKVQPFKRNI GTIIGFTWIF 180
  181 SILCAMPFAI HHRADYIMKS WPGTDNRIPV KSSKMCMIAV MFEPKLASTF KILFHFSAIA 240
  241 FFALPLFTIV ILYARIACKV SSNRTIQPGE LDITEELQMR INAILCAIVS AFFICYLPFQ 300
  301 LQRLLFFYFD NEVILTWVNQ YMYFISGFLF YLATIINPIA YNLASSRFRR AFKDILIDYC 360
  361 WRGGSERYPR SSFSKYSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.93
Transmembrane Helix	55	76	0.87
Cytoplasmic	77	87	0.91
Transmembrane Helix	88	110	0.91
Non-Cytoplasmic	111	128	0.93
Transmembrane Helix	129	153	0.78
Cytoplasmic	154	169	0.84
Transmembrane Helix	170	191	0.94
Non-Cytoplasmic	192	231	0.97
Transmembrane Helix	232	256	0.87
Cytoplasmic	257	280	0.91
Transmembrane Helix	281	300	0.95
Non-Cytoplasmic	301	320	0.92
Transmembrane Helix	321	343	0.91
Cytoplasmic	344	378	0.98