YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04040
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAPHTNIMS IARVLIIIAS ISVICITLFI SRPVTRESSI IIAPKTRDMR AEQIRLFALN  60
   61 AMVKANSHTL PPRSKNISAK NLCSRRMTCA PHNRRYETML KVSPKYKMVN CVVQKSMSTM 120
  121 MTGAMCYLYD EKAYADSGRT FDDEFSTRFC KNKNEFSSVN AVRDAYNISF VKTDWLFSMI 180
  181 TRDPIDRFVS GYVDRCVRIS QKNETGQCNG CGLNMTCFIE NEYKRLMEIS FKRKTHRTME 240
  241 DAHFFPQIWH CDLNEDLEFF EFIQYSNNPE TTMMPQLEEM LKRQKVPSDS IRFIKNELLY 300
  301 KKSSHSTTGT PASRFYRSRY S

Type	Start	End	Confidence
Cytoplasmic	1	10	0.82
Transmembrane Helix	11	30	0.97
Non-Cytoplasmic	31	321	0.91