YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03995
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVYLKALM CIWGIFWNVL IVAAILKDRV LRNSSTFLLL SLHFVACTVD VGSRLVFDVP  60
   61 SEILNRPLFR LSVNYDDFPT KLFHFTTYSC WFIQLYSLIA IAGSHILAVY GTLYYARFTQ 120
  121 KKTIFAIIGI VFLSMLSVCY LWSPEFPIIF HPEFWGWTEE RNKPLVNFFF YLNYVVQGIV 180
  181 FFCLGLTDIL IVYKLSTIKE SVFSNEKSAT VAPAEMMQKM QVSVVNSGNM MAPRKTSRVS 240
  241 TELKVSINFI IVSMFLLVQT LIYNICTLYE DNNLCLFLLF IAPIFRGSKC LAYMVSGSAL 300
  301 RNAIVNLILC RKKF

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.73
Transmembrane Helix	6	26	0.90
Cytoplasmic	27	35	0.69
Transmembrane Helix	36	57	0.74
Non-Cytoplasmic	58	91	0.96
Transmembrane Helix	92	114	0.92
Cytoplasmic	115	123	0.85
Transmembrane Helix	124	144	0.95
Non-Cytoplasmic	145	173	0.89
Transmembrane Helix	174	193	0.92
Cytoplasmic	194	244	0.95
Transmembrane Helix	245	263	0.93
Non-Cytoplasmic	264	275	0.71
Transmembrane Helix	276	297	0.67
Cytoplasmic	298	314	0.70