YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03850
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYAIIIIGS WLMTTCGIFV FLTLSNTEKP LGYGRYSDSL ATTRTLPPTI SWMIQGFPSF  60
   61 IIPFYLYWTN QHLTEYGSFL TCLMTFHYAY RSFVYPFIIN SDNQSPVKIV IMAFGFSVLN 120
  121 GFIQGTWNAF YQPEFDTLHP KFFVFLGAWL FVIGFITHCV SDLHLITLRN DYLNSYSIPR 180
  181 GHYFEYISCP NYFGECLQWI GYALAARSFP AIAFAFFIVC NLAPRAMSHH KWYQKMFGEQ 240
  241 YPRDRHALVP GVW

Type	Start	End	Confidence
Cytoplasmic	1	4	0.46
Transmembrane Helix	5	27	0.87
Non-Cytoplasmic	28	45	0.47
Transmembrane Helix	46	68	0.84
Cytoplasmic	69	75	0.40
Transmembrane Helix	76	94	0.65
Non-Cytoplasmic	95	108	0.60
Transmembrane Helix	109	131	0.86
Cytoplasmic	132	141	0.67
Transmembrane Helix	142	166	0.82
Non-Cytoplasmic	167	202	0.73
Transmembrane Helix	203	223	0.85
Cytoplasmic	224	253	0.83