YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pir-1
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEPRCTAIV NFLNLSHSIL ISIFSVSVMS NYHHNHNYQH RPRGYERLPG KRLPDRWNIY  60
   61 DNVGRDIDGT RFVPFKTPLD SSFFDGKNMP VELQFGVKTL ISLAQQANKQ IGLVIDLTNT 120
  121 DRYYKKTEWA DHGVKYLKLN CPGHEVNERE DLVQDFINAV KEFVNDKEND GKLIGVHCTH 180
  181 GLNRTGYLIC RYMIDVDNYS ASDAISMFEY YRGHPMEREH YKKSLYEAER KKKYGKSSGK 240
  241 SSGNSADSTI SSEQLHRNNS Q

Type	Start	End	Confidence
Cytoplasmic	1	9	0.44
Transmembrane Helix	10	29	0.50
Non-Cytoplasmic	30	261	0.91