YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03664
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDVFNTFTF HFCSCSLWGC HNKTSTAQNP QCTRVPHIYN TDEGRKTTVT YDNFHCHDEA  60
   61 DSTDSHDSNR RATRILWLTV VLCLFFMVCE VIGGVLAGSL AIVTDAAHLL TDFASVLISL 120
  121 FSLYIARRPP SQKMSFGFHR AEVLGAFFSV FLIWIVTGVL VVLAIMRIVS GDYEVEGGIM 180
  181 ALTAALGVVV NLVMLALLYF GGHSHSHGGG SSHGHSHGGG NGDNINVRAA FIHVLGDLLQ 240
  241 SLGVLVAALF IYFQPSWVII DPICTLVFSV IVLCTTIYIL RDAMIVLLEG RPSNIDFAKV 300
  301 FSSLEDIEGV KKVHDLRIWS LTMDKIALSV HLEIDANSQS QSILRETRKM LKQTYNVHEI 360
  361 TIQIEEFGAN RSDCGKCDFP TK

Type	Start	End	Confidence
Cytoplasmic	1	74	0.99
Transmembrane Helix	75	98	0.91
Non-Cytoplasmic	99	105	0.76
Transmembrane Helix	106	126	0.93
Cytoplasmic	127	143	0.93
Transmembrane Helix	144	168	0.89
Non-Cytoplasmic	169	178	0.86
Transmembrane Helix	179	201	0.93
Cytoplasmic	202	230	0.94
Transmembrane Helix	231	252	0.91
Non-Cytoplasmic	253	258	0.77
Transmembrane Helix	259	280	0.94
Cytoplasmic	281	382	0.98